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Changelog

Fusion v2.4.12

Fusion

How to pin this version​

fusion {
  enabled = true
  containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.12-amd64.json'
}
info

For ARM64 CPU architecture, use containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.12-arm64.json'.

Feature updates and improvements​

  • Bumped Fusion Snapshot to 1.1.0.
  • Fixed warning on Spot reclaim.

Bug fixes​

  • Fixed unlock function to match mutex type.
  • Fixed EISDIR on Azure accounts with hieararchical namespaces enabled.

Fusion Snapshot 1.1.0 changelog​

  • Returns a specific error code (175) on failed restore.

Seqera Cloud v25.1.0_cycle10 - cycle12

Seqera Cloud

Seqera Compute​

Seqera Compute is now in public preview. Seqera Compute is a fully managed, optimized compute environment which eliminates infrastructure complexity by automating environment setup, resource provisioning, scaling, and optimization.

Platform interface updates​

Pipeline run details​

Refreshed the pipeline run details page with improvements such as:

  • Clear, dynamic view of pipeline execution in real time via a progress bar.
  • A dedicated Run info tab with a centralized view of run metadata and status details.
  • Improved navigation tabs for Tasks, Logs, Metrics, and Containers.

New Seqera Platform sidebar​

Replaced the Platform top navigation with a sidebar for improved navigation.

AWS Cloud compute environment​

The new AWS Cloud compute environment supports faster startup time, simplified configuration, and fewer AWS dependencies. Using this compute environment, Studios can now be launched on Spot instances. The AWS Cloud compute environment is best suited to run Studios and small to medium-sized pipelines. It offers more predictable compute pricing, given the fixed instance type. It spins up a standalone EC2 instance and executes a Nextflow pipeline or Studio session with a local executor on the EC2 machine. At the end of the execution, the instance is terminated.

API documentation improvements​

Updated the Seqera Platform API documentation. Featuring overview pages with parameter and request body tables, categorized by Platform entity (compute environments, pipelines, etc.), the documentation now provides easier reference and detailed request examples.

Other new features and improvements​

Compute environments​

  • Added Fusion snapshots to AWS Batch.
  • Enabled DRAINING status for Spot instance reclamation. When an instance is in DRAINING status, no new task can be scheduled on it. See Configuring Amazon ECS Linux container instances to receive Spot Instance notices for more information.
  • AWS Cloud compute environment defaults to the public Seqera AMI when not specifying an AMI ID during compute environment creation.

Studios​

  • Added Spot option for AWS Cloud compute environment.

Pipelines​

  • Supported markdown rendering for Nextflow object field help_text and description properties.
note

This changelog includes releases

  • v25.1.0-cycle10_37f83e6
  • v25.1.0-cycle11_cde3ebf
  • v25.1.0-cycle11_0ff195a
  • v25.1.0-cycle12_3d9ec0c
  • v25.1.0-cycle12_8bf53cd
  • v25.1.0-cycle12_c98e9a5
  • v25.1.0-cycle12_1d46e0f
  • v25.1.0-cycle12_61865f4
  • v25.1.0-cycle12_fbec4ef
  • v25.1.0-cycle12_20df528

Seqera Cloud v25.1.0_cycle9

Seqera Cloud

Feature updates and improvements​

  • Fusion
    • Added Fusion Snapshots support in AWS Batch compute environments, enabling Fusion to automatically restore jobs interrupted by AWS Spot instance reclamation. See Fusion Snapshots for more information.

Bug fixes​

Workflows​

  • Fixed container table pagination.
  • Made task-level containers tab visible only when containers are available.

Launch form​

  • Fixed a launch form issue with eager parameter keyword interpolation.

Seqera Cloud v25.1.0_cycle7

Seqera Cloud

Feature updates and improvements​

Data Explorer​

  • You can now drag and drop multiple folders or files to upload them to your cloud bucket, or you can select Upload, then select multiple files to upload.

Compute environments​

  • Changed the default for the single VM compute environment to the Seqera-optimized AMI. When not specifying an AMI during compute environment creation, the system defaults to the Seqera-optimized AMI.

Workflows​

  • Added a more detailed warning for workflow cleanup issues that are related to access restrictions to the AWS Batch compute environment.
  • Added task status badges with icons to the workflow run tasks table.

Launchpad​

  • Added support for array type parameters in the Launch form.
  • Implemented support for multiple extension dataset parameters in the input form.
  • Show Nextflow config parameters that are binary expressions in the Launch form.

API​

  • Added azure_entra to the provider list of credentials in the OpenAPI spec.

General​

  • Delete pipeline secrets in the user context from the provider.
  • Switch logs, secrets-manager, marketplace-meter, and simple-email dependencies to AWS SDK v2.
  • Switched AWS S3 to SDK v2.

Bug fixes​

General​

  • Modify cache expiration policy to resolve "Connection pool shut down" error with new AWS SDK v2 clients.

Workflows​

  • Fixed an issue where the workflow details page displayed the Edit Labels button even when there were no labels, but the workflow had attached resource labels.

Launchpad​

  • Fixed an issue where the Quick Launch form did not select the primary compute environment by default.

Seqera Enterprise v24.2.5

Seqera Enterprise

Feature updates and improvements​

Compute environments​

This release backports the default Azure image fix from v25.1.1 to v24.2.x:

Azure Batch support for Ubuntu 20.04 LTS ending

The default Azure Batch Ubuntu image now uses sku 22.04. This ensures no issues with the existing Azure Batch Ubuntu image (sku 20.04) which will be deprecated after April 23, 2025. See, https://github.com/Azure/Batch/issues/174 for more information about the deprecation.

Seqera Enterprise v25.1.1

Seqera Enterprise

Feature updates and improvements​

Compute environments​

  • Azure Batch support for Ubuntu 20.04 LTS ending: The default Azure Batch Ubuntu image now uses sku 22.04. This ensures no issues with the existing Azure Batch Ubuntu image (sku 20.04) which will be deprecated after April 23, 2025. See, https://github.com/Azure/Batch/issues/174 for more information about the deprecation.

Launchpad​

  • Implemented support for multiple extension dataset parameters in the input form.