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Changelog

Fusion v2.4.15

Fusion

How to pin this version​

fusion {
  enabled = true
  containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.15-amd64.json'
}
info

For ARM64 CPU architecture, use containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.15-arm64.json'.

Feature updates and improvements​

  • Added incremental dumps on 2.4.
  • Bumped snapshots to 1.6.0 in 2.4.15

Fusion v2.5.4

Fusion

How to pin this version​

fusion {
  enabled = true
  containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.5.4-amd64.json'
}
info

For ARM64 CPU architecture, use containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.5.4-arm64.json'.

Feature updates and improvements​

  • Added support for checksum algorithm.
  • Added incremental dumps.
  • Added ability to disable OTEL machinery if tracing not enabled.
  • Added fallback to use AZ_BATCH_TASK_WORKING_DIR as FUSION_CACHE_LOCATION.
  • Updated fusion snapshots to 1.6.0
  • Bumped github.com/docker/docker from 28.2.2+incompatible to 28.3.3+incompatible
  • Bumped hoverkraft-tech/compose-action from 2.3.0 to 2.4.0
  • Bumped google.golang.org/grpc from 1.75.0 to 1.75.1
  • Bumped actions/download-artifact from 4.3.0 to 5.0.0
  • Bumped insightsengineering/coverage-action from 2.7.2 to 3.0.1

Nextflow 25.09.0-edge

Nextflow

Feature updates and improvements​

  • Added listDirectory traversal API to RepositoryProvider abstraction by @pditommaso in #6430
  • Added step to claim plugin in Gradle plugin migration docs by @christopher-hakkaart in #6450
  • Added support for comma-separated file paths in ProcessEntryHandler by @pditommaso in #6434
  • Added support for Java 25 by @pditommaso in #6419
  • Added unit test for invalid workflow entry name error handling by @pditommaso in #6409
  • Generated plugin spec by @bentsherman in #6361
  • Updated Gradle build system to version 9.1.0 by @pditommaso in #6418
  • Bumped Google Cloud libraries to latest versions by @pditommaso in #6438
  • Bumped nextflow-gradle-plugin version 1.0.0-beta.10 by @pditommaso in 812ed7f
  • Bumped nf-amazon@3.3.0 by @pditommaso in 3561c26
  • Bumped nf-azure@1.20.1 by @pditommaso in fae3c2d
  • Bumped nf-codecommit@0.5.0 by @pditommaso in 91514a6
  • Bumped nf-google@1.23.1 by @pditommaso in 153745a
  • Bumped nf-k8s@1.2.1 by @pditommaso in c4f4eca
  • Bumped nf-tower@1.16.0 by @pditommaso in ef91104
  • Bumped nf-wave@1.16.0 by @pditommaso in be01d3f

Bug fixes​

  • Fixed cache command to check session cloudCachePath by @pditommaso in a88e2cd
  • Fixed cache command to use SysEnv for cloudcache path check by @pditommaso in #6432
  • Fixed cookie policy for Seqera Platform JWT token refresh by @pditommaso in #6411
  • Fixed CVE-2025-55163 in nf-google plugin by @pditommaso in 7d70617
  • Fixed default fields in trace config by @bentsherman in #6403
  • Fixed pod log warning with Fusion enabled by @jorgee in #6449
  • Fixed SIGTERM forwarding in AWS Batch jobs by @jorgee in #6414
  • Fixed "Strings must not be null" error message by @bentsherman in #6404
  • Fixed unstage controls in command.run when using storeDir by @jorgee in #6364
  • Limited S3 concurrent downloads to fix Java Heap OOM by @jorgee in #6402
  • Got exit code from pod to manage OOM in k8s by @jorgee in #6442

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v25.09.0-edge

Seqera Cloud v25.3.0_cycle27

Seqera Cloud

Feature updates and improvements​

Datasets​

  • Enhanced dataset management with an updated details page.
  • Added the ability to hide/show datasets and disable specific dataset versions for better dataset lifecycle management.
  • Added support for dataset labels to improve organization and categorization of datasets within workspaces.

Workflows​

  • Added the ability to filter pipeline runs by dataset ID using the datasetId: search keyword, improving traceability between datasets and workflows.

Bug fixes​

Pipelines​

  • Fixed an issue where errors for deleted or invalid pipeline revisions appeared on the wrong field, making them difficult to identify and resolve.

Seqera Enterprise v25.2.3

Seqera Enterprise

Feature updates and improvements​

Studios​

  • Added three new configuration parameters for customizing Docker image naming conventions in Studios Wave integration.
  • Added eStarGZ support for Studios with conda packages.

Workflows​

  • Introduced multiple improvements to the Usage Overview to simplify compute usage tracking.
  • Added automatic memory tracking for billing to automatically capture actual memory usage for tasks without explicit memory limits, ensuring accurate consumption tracking.
  • The progress response now includes retries and ignored status task counts when a workflow is finalized.

Pipelines​

  • Improved loading time for pipeline details (up to 700ms improvement) for repositories like nf-core/rnaseq. This resolves timeout issues when launching pipelines.

Bug fixes​

Pipelines​

  • Fixed a missing newline in the includeCustomUserConfig method and resolved an issue where where custom config includeConfig statements were improperly concatenated, causing syntax errors when parsed.

Seqera Cloud v25.3.0_cycle25

Seqera Cloud

Feature updates and improvements​

Compute environments​

  • Added FSx Lustre support for Amazon Linux 2023 AMIs with automatic fallback from the Amazon Linux 2 installation method.

API​

  • Added an optional maxLength query parameter to workflow log endpoints (GET /{workflowId}/log and GET /{workflowId}/log/{taskId}) for improved log management.
  • Added the managed identity and managed credentials endpoint to Seqera Platform API documentation.

Datasets​

  • Added user tracking fields to datasets and dataset versions. Datasets now include a lastUpdatedBy field to track the user who last modified the dataset, while dataset versions include a createdBy field to track the user who created each version.

Permissions and roles​

  • Removed the role check to show organization member mail, so organization owners can now view member and collaborator emails.

UI/UX​

  • Improved the visual consistency and user experience across workflow run interfaces. Updates include improved table borders, enhanced tooltip information, and refined pagination layouts in the containers view.

General​

  • Improved warning messages in Seqera Platform when cancelling workflows or stopping Studios due to insufficient credits.